Database and Service

Bioinformatics and Statistics Links

NCBI (http://www.ncbi.nlm.nih.gov/)

SwissProt (http://us.expasy.org/sprot/)

ExPASy (http://www.expasy.ch/)

ABIM: list of on line analysis tools (http://www.up.univ-mrs.fr/~wabim/english/logligne.html#haut)

MSU Bioinformatics Services Basic Statistics (http://genomics.msu.edu/bioinformatics/Bioinformatics.html)

Gene Ontology Consortium (http://www.geneontology.org/doc/GO.doc.html)

..............


EST Databases

WildSilkbase (http://www.cdfd.org.in/wildsilkbase)

GarlicESTdb(http://garlicdb.kribb.re.kr/)

MytiBase (http://mussel.cribi.unipd.it/)

CerealsDB (http://www.cerealsdb.uk.net/CerealsDB/Documents/DOC_CerealsDB.php)

Pepper EST Database (http://genepool.kribb.re.kr/pepper/)

ESTuberdb (http://www.itb.cnr.it/estuber)

NRESTdb/ (http://www.genomemalaysia.gov.my/nrestdb/)


Pathway and Compound Databases

MetaCyc (http://metacyc.org)

Enzyme Nomenclature (IUBMB) (http://www.chem.qmw.ac.uk/iubmb/enzyme/)

Biochemical Nomenclature (IUBMB) (http://www.chem.qmw.ac.uk/iubmb/nomenclature/)

KEGG (http://www.genome.ad.jp/kegg/kegg2.html)

ExPaSy Pathways (http://www.expasy.ch/cgi-bin/search-biochem-index)



Arabidopsis and Plant Links

The Plant Specific Database (http://genomics.msu.edu/plant_specific/)

Co-Response Database (MPI in Golm) (http://csbdb.mpimp-golm.mpg.de/csbdb/dbcor/ath.html)

Arabidopsis Coexpression Data Mining Tools (Leeds University) (http://www.arabidopsis.leeds.ac.uk/act/)

Arabidopsis AtGenExpress Visualization Tool (MPI in Tubingen) (http://jsp.weigelworld.org/expviz/expviz.jsp)

Arabidopsis Coexpression Tool (University of Alabama at Birmingham) (http://obiwan.ssg.uab.edu:8080/coexpression/Step1.html)

ABRC (Arabidopsis Resource Center, Ohio State University) (http://www.biosci.ohio-state.edu/~plantbio/Facilities/abrc/abrchome.htm)

SIGnAL: Salk Institute T-DNA KO lines (http://signal.salk.edu/cgi-bin/tdnaexpress?TDNA=S16&INTERVAL=100)

DATF: Database of Arabidopsis Transcription Factors (http://datf.cbi.pku.edu.cn/)

TIGR Arabidopsis Genome Annotation Database (Genes and Proteins) (http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml

Genome Cluster Database (Rice and Arabidopsis protein families) (http://bioweb.ucr.edu/databaseWeb/index.jsp

TIGR Arabidopsis Gene Index (ESTs, TCs and TOGs) (http://www.tigr.org/tdb/tgi/agi/

TAIR: The Arabidopsis Information Resource (http://www.arabidopsis.org/

 


Lipid Links

LIPID MAPS: Lipid structures and enzymes (http://www.lipidmaps.org/)

The Lipid Library (http://www.lipidlibrary.co.uk/)

Cyberlipid Center (http://go.to/cyberlipid/)

Kathy Schmid's Plant Lipid Home page (http://blue.butler.edu/~kschmid/lipids.html)

National Plant Lipid Cooperation (http://www.msu.edu/user/ohlrogge/)

National Plant Lipid Cooperative Meetings (http://www.plantlipids.org/)

Plant Lipid Metabolism Lab (http://www.plantbiology.msu.edu/ohlrogge/index.shtml)

ARALIP: Arabidopsis Acyl-Lipid Metabolism (http://aralip.plantbiology.msu.edu/)

 

Plant Metabolism and oil crops

Plant Genome Outreach Portal (http://www.plantgdb.org/pgrop/)

Arabidopsis Reactome (http://www.arabidopsisreactome.org/)

metacrop (http://metacrop.ipk-gatersleben.de)

Plant Metabolic Network (PMN) (http://www.plantcyc.org/)

Shanghai Rapeseed Database (http://rapeseed.plantsignal.cn/)

Enhancing Canola through Genomics (http://www.genomeprairie.ca/canola/)

SoyBase (USDA-ARS Soybean Genetics Database) (http://soybase.org/)

Quizzing the Chemical Factories of Oilseeds (NSF-Plant Genome Grant) (http://genomics.msu.edu/oilseeds/index.html)

Microarray Analysis of Developing Arabidopsis Seeds (http://www.bpp.msu.edu/Seed/SeedArray.htm)

 

 
Last modified at: 2013-01-15
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