Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 38 synteny regions on B. rapa A10 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
342 A10 15677577..17879701 + Chr1 920950..2355771 0 Link
343 A10 13102877..13865706 + Chr1 400035..916222 5.40E-180 Link
347 A10 12790643..13222716 - Chr1 3631..414645 1.70E-271 Link
348 A10 17634990..18046401 - Chr1 17326556..17721841 1.50E-38 Link
544 A10 4796831..6248193 + Chr2 6950088..7834240 5.70E-180 Link
545 A10 15014351..15646248 + Chr2 6666316..6947688 1.80E-40 Link
552 A10 16703551..17049680 - Chr2 13256738..13629146 8.90E-67 Link
553 A10 17152076..17526419 - Chr2 12776386..13178328 1.10E-66 Link
554 A10 16357454..16644616 - Chr2 13674498..13856112 1.10E-38 Link
555 A10 16029253..16166996 - Chr2 14041038..14162527 1.30E-26 Link
787 A10 2372467..2858092 + Chr3 3360888..3770413 2.20E-60 Link
788 A10 631750..944453 + Chr3 4342..258547 5.90E-35 Link
789 A10 6187072..6545733 + Chr3 889509..1222655 3.30E-30 Link
790 A10 7888033..8437807 + Chr3 16236343..16753833 2.00E-30 Link
791 A10 19011680..19416837 + Chr3 15660859..16020254 5.80E-28 Link
801 A10 3688710..4888598 - Chr3 2702973..3378369 2.30E-189 Link
802 A10 28105..605647 - Chr3 394070..759282 1.90E-147 Link
803 A10 6464158..6825021 - Chr3 1795337..1949789 6.80E-49 Link
987 A10 9475493..11596736 + Chr4 13116076..13761559 2.10E-112 Link
988 A10 5127144..6238427 + Chr4 16664822..17104479 1.30E-45 Link
989 A10 13375706..13865706 + Chr4 844409..1527133 7.50E-50 Link
990 A10 14022727..14645812 + Chr4 12192136..12519841 1.20E-23 Link
995 A10 13835695..14696189 - Chr4 6574472..7057954 9.70E-172 Link
996 A10 12909826..13152014 - Chr4 345952..659178 4.50E-45 Link
997 A10 9369740..9950587 - Chr4 14566265..14880331 9.80E-32 Link
1268 A10 5979338..7055238 + Chr5 5799905..6755080 0 Link
1269 A10 7068746..8064609 + Chr5 6814093..7697927 2.5e-315 Link
1270 A10 2391692..2985115 + Chr5 1496855..2154553 9.90E-292 Link
1271 A10 3272398..3839420 + Chr5 2455634..3114239 1.30E-201 Link
1272 A10 2962701..3228515 + Chr5 24629280..25028414 1.40E-32 Link
1273 A10 4682511..4751749 + Chr5 9869..128960 1.20E-23 Link
1282 A10 8063075..12636594 - Chr5 21334793..24496351 0 Link
1283 A10 10299..2370845 - Chr5 3047218..5715075 0 Link
1284 A10 3696620..4672432 - Chr5 383153..1480197 0 Link
1285 A10 2987021..3326038 - Chr5 2136160..2455546 1.50E-174 Link
1286 A10 15711242..16028627 - Chr5 17385867..17843678 7.00E-68 Link
1287 A10 18106540..18529843 - Chr5 20201101..20489727 1.10E-40 Link
1288 A10 1839604..2090817 - Chr5 8512042..8865677 7.40E-33 Link

1
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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