Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 95 synteny regions on B. rapa A09 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
276 A09 22652859..24819243 + Chr1 10828933..11972590 5.40E-253 Link
277 A09 1169890..1763991 + Chr1 2025601..2936586 3.80E-245 Link
278 A09 19438730..20267010 + Chr1 7964042..8569996 2.40E-220 Link
279 A09 33625351..34789382 + Chr1 10178902..10864700 1.30E-178 Link
280 A09 16594431..17287332 + Chr1 23355017..24030780 5.50E-156 Link
281 A09 21557495..22439402 + Chr1 9481532..10127068 2.40E-165 Link
282 A09 3964911..4572882 + Chr1 5896416..6734882 7.50E-148 Link
283 A09 894696..1165273 + Chr1 3631..422437 7.00E-102 Link
284 A09 1768244..2077156 + Chr1 2986939..3517888 2.40E-96 Link
285 A09 2106483..2425958 + Chr1 3639878..4063337 4.60E-47 Link
286 A09 4332997..4572882 + Chr1 28041191..28232831 6.20E-23 Link
301 A09 2431805..3966665 - Chr1 4070124..5938761 0 Link
302 A09 20265597..21554061 - Chr1 8593642..9465444 0 Link
303 A09 26342538..27815714 - Chr1 22208332..23410815 0 Link
304 A09 17259148..18015387 - Chr1 23417494..24033556 1.50E-247 Link
305 A09 318605..618956 - Chr1 865915..1399053 4.20E-191 Link
306 A09 1841..313487 - Chr1 1454969..2027271 4.20E-193 Link
307 A09 19752309..20818855 - Chr1 26040689..26711462 8.50E-174 Link
308 A09 30413389..31153511 - Chr1 21431118..22154589 1.60E-159 Link
309 A09 619158..895718 - Chr1 427548..802436 7.20E-122 Link
310 A09 2110773..2216917 - Chr1 3558358..3719681 5.30E-55 Link
311 A09 5844432..6380921 - Chr1 427548..770684 5.50E-65 Link
312 A09 30492859..31613591 - Chr1 2848348..3472672 7.80E-70 Link
313 A09 31093098..31539813 - Chr1 21035618..21420803 3.80E-51 Link
314 A09 25225860..25742755 - Chr1 933512..1205803 2.80E-45 Link
315 A09 3744597..3966665 - Chr1 23111818..23452311 6.90E-46 Link
316 A09 5473044..5782360 - Chr1 5928..204335 1.20E-43 Link
317 A09 16008868..16192356 - Chr1 22988196..23352645 3.00E-43 Link
318 A09 2709782..2897637 - Chr1 30151003..30394383 6.70E-40 Link
319 A09 26481061..27041260 - Chr1 4013121..4221774 9.50E-33 Link
320 A09 27239655..27637335 - Chr1 3599271..3804185 1.20E-29 Link
321 A09 19597984..19719570 - Chr1 26764672..26928056 3.90E-26 Link
322 A09 3119211..3371568 - Chr1 9151732..9433190 8.50E-26 Link
503 A09 4701363..5250663 + Chr2 8739911..9414518 1.60E-206 Link
504 A09 11400055..12823643 + Chr2 16257228..17477223 8.10E-142 Link
505 A09 7379065..7718384 + Chr2 9845694..10312328 2.20E-82 Link
506 A09 13572936..14123944 + Chr2 18216684..18911982 2.50E-91 Link
507 A09 10307138..11193859 + Chr2 15056753..15950228 7.50E-68 Link
508 A09 12939947..13670449 + Chr2 17611185..18204912 7.40E-44 Link
509 A09 14186622..14472702 + Chr2 18954570..19326397 4.90E-40 Link
510 A09 4539562..4697206 + Chr2 8404901..8682112 2.70E-34 Link
511 A09 31926831..32234123 + Chr2 8049663..8296275 4.90E-31 Link
512 A09 33633234..34784802 + Chr2 14413758..14704353 5.10E-31 Link
513 A09 3192978..3362580 + Chr2 763011..1065372 2.00E-27 Link
514 A09 18466009..18725445 + Chr2 7679008..7984096 6.50E-22 Link
528 A09 14893952..15472209 - Chr2 10281847..11004235 2.30E-233 Link
529 A09 15454784..15912749 - Chr2 7353847..8035363 4.10E-188 Link
530 A09 28147315..28831650 - Chr2 421624..1164573 2.20E-172 Link
531 A09 16250550..16577759 - Chr2 8309816..8838598 1.40E-152 Link
532 A09 31790178..32041135 - Chr2 9426849..9666981 9.70E-80 Link

1 2
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo