Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 68 synteny regions on B. rapa A06 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
137 A06 1356445..3182324 + Chr1 17681157..19795544 0 Link
138 A06 7072552..8760265 + Chr1 6363172..7469721 0 Link
139 A06 7132257..8749461 + Chr1 27855699..28904311 3.70E-197 Link
140 A06 3903299..4559183 + Chr1 4010779..4594391 5.60E-188 Link
141 A06 22957638..23246524 + Chr1 7476087..7692438 2.00E-81 Link
142 A06 137931..586897 + Chr1 20554352..20993072 2.30E-84 Link
143 A06 6015575..6402496 + Chr1 29467437..29993724 3.00E-68 Link
144 A06 20059756..20871755 + Chr1 4761042..5194203 1.90E-71 Link
145 A06 484284..731154 + Chr1 19806419..20173949 4.70E-62 Link
146 A06 3910550..4372664 + Chr1 22997826..23509053 2.20E-48 Link
147 A06 14988295..15566766 + Chr1 11663070..11978521 3.30E-41 Link
148 A06 3801..136766 + Chr1 20137712..20262266 3.10E-32 Link
160 A06 5409630..7133535 - Chr1 4907953..6453114 0 Link
161 A06 4566170..5542961 - Chr1 2956589..3985215 0 Link
162 A06 585383..1288964 - Chr1 2421216..3047393 0 Link
163 A06 3513184..3902162 - Chr1 4608196..4921596 6.60E-162 Link
164 A06 5660474..5996293 - Chr1 27162820..27618897 1.80E-88 Link
165 A06 6411147..6745548 - Chr1 30092924..30400340 1.70E-67 Link
166 A06 22511901..22827920 - Chr1 944595..1168878 3.20E-47 Link
167 A06 5288237..5518795 - Chr1 21195804..21438889 2.00E-37 Link
168 A06 4706999..4859054 - Chr1 22401244..22641016 4.80E-32 Link
169 A06 1904186..2133654 - Chr1 18354786..18456544 3.30E-30 Link
170 A06 18270392..18664387 - Chr1 8944609..9150250 9.00E-23 Link
171 A06 18270392..18664387 - Chr1 25725455..26052567 3.30E-22 Link
446 A06 18253952..18391369 + Chr2 1050842..1332419 9.80E-39 Link
447 A06 22019110..22286518 + Chr2 9055398..9436544 6.50E-34 Link
448 A06 3513184..3807911 + Chr2 787915..1106791 3.40E-25 Link
454 A06 20059756..20896831 - Chr2 73258..1040118 0 Link
455 A06 17173858..17700764 - Chr2 7564345..8286445 5.30E-170 Link
456 A06 11161147..11243090 - Chr2 7396337..7546374 1.50E-22 Link
706 A06 18396995..19469640 + Chr3 9279513..10521532 0 Link
707 A06 9581455..11083248 + Chr3 17222027..18440010 9.00E-167 Link
708 A06 19470637..19834834 + Chr3 10588947..11400266 2.90E-114 Link
709 A06 17732367..18160618 + Chr3 2126414..2498095 5.00E-35 Link
710 A06 2360756..2809579 + Chr3 7079617..7530677 6.40E-32 Link
711 A06 11356465..12001067 + Chr3 18037047..18373024 6.70E-34 Link
712 A06 1356445..1866712 + Chr3 5884374..6332218 2.00E-32 Link
713 A06 16982356..17156213 + Chr3 18417568..18510963 2.70E-21 Link
714 A06 25530375..25788417 + Chr3 17867316..18074641 7.00E-23 Link
721 A06 23247913..25431596 - Chr3 16920445..18447646 0 Link
722 A06 2798192..3179428 - Chr3 5159698..5614410 5.70E-102 Link
723 A06 25786768..26192401 - Chr3 16477561..16949220 4.20E-75 Link
724 A06 3801..332710 - Chr3 4331756..4731803 7.50E-65 Link
725 A06 3199243..3502379 - Chr3 19542931..19669774 4.60E-48 Link
726 A06 13034869..13277149 - Chr3 1317260..1546396 1.40E-43 Link
727 A06 12707571..13018561 - Chr3 1612860..1785334 1.30E-39 Link
728 A06 8881685..9413447 - Chr3 15972909..16266314 4.90E-37 Link
729 A06 484284..634705 - Chr3 4903012..5141348 2.60E-35 Link
896 A06 20918730..21740516 + Chr4 9648527..10523961 1.30E-117 Link
897 A06 21913825..22286518 + Chr4 17909919..18451293 1.90E-101 Link

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@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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