Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 57 synteny regions on B. rapa A05 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
97 A05 2995600..4120043 + Chr1 19407364..20262266 8.90E-150 Link
98 A05 14343505..15651757 + Chr1 1762734..2290977 1.80E-66 Link
99 A05 8052460..8313605 + Chr1 7704255..7927278 8.90E-59 Link
100 A05 13159467..13768645 + Chr1 19751372..20106015 2.20E-52 Link
101 A05 4830291..5381508 + Chr1 17798431..18042744 2.20E-40 Link
102 A05 5647177..6159797 + Chr1 18198227..18477643 1.00E-35 Link
103 A05 12787151..13087326 + Chr1 17970678..18322284 6.70E-31 Link
104 A05 8052460..8276619 + Chr1 29220538..29452417 4.30E-28 Link
105 A05 4153973..4547540 + Chr1 20560284..20753079 8.10E-32 Link
106 A05 21687627..21953076 + Chr1 11396402..11821710 5.80E-31 Link
107 A05 7077481..7595310 + Chr1 18977284..19299118 6.40E-22 Link
108 A05 22464144..22934498 + Chr1 1114405..1333567 6.60E-23 Link
114 A05 8327537..9583784 - Chr1 18681932..19702916 0 Link
115 A05 15744098..15991449 - Chr1 3252240..3680924 4.20E-165 Link
116 A05 10921216..11360682 - Chr1 11372425..11630626 4.90E-74 Link
117 A05 6282667..7090449 - Chr1 18607047..19050162 2.30E-64 Link
118 A05 14011890..14149036 - Chr1 20729182..20966341 1.00E-38 Link
119 A05 16526313..16893336 - Chr1 613216..864125 1.90E-36 Link
120 A05 9854470..10849201 - Chr1 12261419..12609084 7.90E-39 Link
121 A05 23217463..23421357 - Chr1 1457063..1559903 7.10E-28 Link
122 A05 19479722..19704101 - Chr1 104491..300729 1.50E-27 Link
435 A05 17609203..19599573 + Chr2 16791098..18954619 0 Link
436 A05 23207889..23543714 + Chr2 13672250..13888232 6.70E-57 Link
439 A05 19600099..21659222 - Chr2 15088832..16875396 0 Link
440 A05 21682658..23208305 - Chr2 13851062..15014284 0 Link
441 A05 16936093..17908710 - Chr2 18939262..19689173 0 Link
442 A05 14742310..15705783 - Chr2 12501092..13266560 0 Link
443 A05 23436337..23712181 - Chr2 13440909..13673256 1.60E-64 Link
444 A05 14478894..14628439 - Chr2 13350422..13451923 5.10E-43 Link
445 A05 18412456..18466666 - Chr2 17771776..17837250 2.50E-27 Link
676 A05 530103..2033581 + Chr3 1852889..3473312 0 Link
677 A05 4405357..6534798 + Chr3 5562571..6991462 0 Link
678 A05 7077481..7791741 + Chr3 7300675..7716343 1.20E-120 Link
679 A05 18488246..19704101 + Chr3 21821349..22806527 2.00E-122 Link
680 A05 173374..345094 + Chr3 326397..541503 9.20E-48 Link
681 A05 7860189..8178253 + Chr3 7777818..7935808 1.20E-41 Link
682 A05 17895049..18275027 + Chr3 21070648..21411612 4.60E-34 Link
683 A05 8339931..8646620 + Chr3 5290847..5605697 2.70E-27 Link
686 A05 2940015..4380117 - Chr3 4361857..5560993 0 Link
687 A05 2022902..3013118 - Chr3 3455355..4353393 0 Link
688 A05 6413509..7219016 - Chr3 6911435..7286260 1.60E-253 Link
689 A05 351379..768126 - Chr3 1354635..1752355 4.00E-229 Link
690 A05 10454..188010 - Chr3 8957..245268 1.30E-142 Link
691 A05 20594119..21857359 - Chr3 19450649..20048572 6.10E-153 Link
692 A05 16936093..17586821 - Chr3 22887889..23311386 5.60E-100 Link
693 A05 19600099..20256946 - Chr3 20197949..20844476 9.70E-93 Link
694 A05 11375860..11891765 - Chr3 8037216..8217080 6.00E-53 Link
695 A05 13159467..13572001 - Chr3 4849788..5186929 2.90E-43 Link
696 A05 18210270..18286017 - Chr3 21384917..21507654 2.10E-32 Link
697 A05 8274802..8920487 - Chr3 7388367..7666195 8.80E-30 Link

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@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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