Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 43 synteny regions on B. rapa A04 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
78 A04 16264351..17275524 + Chr1 12066595..12745648 7.40E-91 Link
79 A04 12799571..13225024 + Chr1 18416480..18758433 4.50E-35 Link
89 A04 8285548..9517189 - Chr1 22139184..22832962 1.40E-277 Link
90 A04 10578807..11461639 - Chr1 1775643..2202774 6.60E-99 Link
91 A04 8340791..9202853 - Chr1 3524018..3882819 1.60E-72 Link
92 A04 11892295..12311184 - Chr1 1167457..1355442 1.80E-24 Link
93 A04 11403911..11773815 - Chr1 1469610..1724734 9.50E-23 Link
412 A04 10557540..12571615 + Chr2 12760139..14775035 0 Link
413 A04 7636312..8279584 + Chr2 11329870..12084664 2.30E-131 Link
414 A04 7167019..7730459 + Chr2 10747211..11269623 2.70E-70 Link
418 A04 13234537..15914909 - Chr2 14750260..17863456 0 Link
419 A04 6080900..7285414 - Chr2 9770894..10764810 0 Link
420 A04 4796516..5813969 - Chr2 9002032..9741104 0 Link
421 A04 15817498..16514508 - Chr2 18495341..19205112 0 Link
422 A04 9665064..10273713 - Chr2 12085377..12499156 2.10E-158 Link
423 A04 533186..1103855 - Chr2 18241692..18911982 4.60E-122 Link
424 A04 11114605..11433036 - Chr2 13352917..13523708 7.60E-46 Link
425 A04 2395975..2931108 - Chr2 16407239..16660437 3.30E-39 Link
426 A04 1154808..1463047 - Chr2 17663444..17880563 3.60E-27 Link
427 A04 2074298..2259746 - Chr2 16886824..17097454 5.50E-22 Link
652 A04 12799571..13232884 + Chr3 6705493..7093501 2.90E-106 Link
653 A04 18244539..18938639 + Chr3 9832689..10446846 4.20E-45 Link
654 A04 20573741..20868579 + Chr3 23300290..23458459 1.80E-36 Link
658 A04 1408779..2931108 - Chr3 20396760..21566482 0 Link
659 A04 217788..1242518 - Chr3 21894134..23057188 0 Link
660 A04 2835815..3592178 - Chr3 19915288..20348582 1.30E-208 Link
661 A04 14615871..15607912 - Chr3 19407023..20112944 1.20E-149 Link
662 A04 13609518..14298939 - Chr3 20557899..21036077 5.80E-97 Link
663 A04 15876416..16257997 - Chr3 22306488..22787972 5.50E-90 Link
664 A04 1206428..1411663 - Chr3 21609307..21858204 2.50E-62 Link
665 A04 122635..509369 - Chr3 23023437..23276375 2.80E-64 Link
666 A04 13388892..13735568 - Chr3 21059915..21411612 1.30E-36 Link
667 A04 4104342..4719386 - Chr3 8443445..8679656 4.70E-23 Link
871 A04 3946412..4725711 + Chr4 7769770..8236715 3.20E-93 Link
874 A04 5144625..5810745 - Chr4 18071884..18584524 1.20E-112 Link
875 A04 6094533..6663619 - Chr4 15042413..15476655 6.90E-71 Link
876 A04 9565295..9821431 - Chr4 8588548..8869273 1.00E-55 Link
877 A04 16331202..17343365 - Chr4 6041342..6373536 1.10E-44 Link
1133 A04 19896403..20713958 + Chr5 15223116..15787946 1.70E-81 Link
1134 A04 19424454..19854381 + Chr5 14805229..15094802 3.30E-51 Link
1135 A04 10286784..10642125 + Chr5 20679225..20831849 8.50E-27 Link
1138 A04 17831750..19362210 - Chr5 15823735..16824756 0 Link
1139 A04 5975849..6210263 - Chr5 15555156..15752962 2.60E-21 Link

1
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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