Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 86 synteny regions on B. rapa A03 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
48 A03 21820187..22121426 + Chr1 18176772..18477643 4.20E-26 Link
49 A03 21522990..21812240 + Chr1 17766874..18042744 3.80E-31 Link
50 A03 23583408..23791147 + Chr1 12351593..12750383 4.90E-25 Link
51 A03 22150620..22378488 + Chr1 18542130..18884225 5.70E-22 Link
57 A03 20909379..21282767 - Chr1 19570058..20031566 3.30E-69 Link
58 A03 17207851..17740784 - Chr1 504673..924726 2.00E-61 Link
59 A03 24484529..24681594 - Chr1 1697583..1904873 1.00E-46 Link
60 A03 24035483..24438746 - Chr1 2037311..2212546 1.20E-38 Link
379 A03 12647709..14025029 + Chr2 15718053..17551175 0 Link
380 A03 14067400..14941406 + Chr2 17625212..19138714 0 Link
381 A03 24759780..25426444 + Chr2 13682557..14868860 1.40E-205 Link
382 A03 24140394..24756470 + Chr2 12781591..13640316 9.90E-188 Link
383 A03 25392066..25989939 + Chr2 14891102..15697402 5.60E-174 Link
384 A03 1153117..1749962 + Chr2 7409063..8079360 4.50E-67 Link
385 A03 14960320..15118925 + Chr2 19237434..19624809 1.70E-58 Link
386 A03 4376050..4983290 + Chr2 8005285..8559741 1.60E-38 Link
393 A03 325..619938 - Chr2 17840388..18496272 1.80E-299 Link
394 A03 11304802..11964113 - Chr2 6649630..7437298 1.90E-162 Link
395 A03 12189532..12398140 - Chr2 1334512..1968037 1.40E-87 Link
396 A03 3813802..4392852 - Chr2 10177834..10560175 2.70E-81 Link
397 A03 15332600..15628657 - Chr2 11226615..11817867 2.50E-80 Link
398 A03 15162512..15275713 - Chr2 12139580..12536964 1.70E-39 Link
399 A03 3446145..3784739 - Chr2 10629737..10993652 3.00E-36 Link
400 A03 11807854..11964113 - Chr2 6171133..6634008 1.70E-36 Link
401 A03 2095812..2537616 - Chr2 9592996..9814220 1.50E-27 Link
402 A03 1653483..1985470 - Chr2 9874907..10204467 3.30E-27 Link
615 A03 20951586..22730904 + Chr3 4971223..7716343 0 Link
616 A03 18492328..19564196 + Chr3 791273..2595572 0 Link
617 A03 19848879..20938402 + Chr3 3199770..4914652 0 Link
618 A03 22749873..23204355 + Chr3 7794957..8477392 1.50E-82 Link
619 A03 18292004..18489982 + Chr3 326397..732875 3.20E-93 Link
620 A03 30312931..30949984 + Chr3 406594..1108069 1.20E-80 Link
621 A03 14232372..14719867 + Chr3 21894134..22447273 2.70E-64 Link
622 A03 13297105..13879318 + Chr3 20358896..21125647 5.90E-51 Link
623 A03 23174265..23446914 + Chr3 8527239..8923073 1.90E-43 Link
624 A03 27865784..28328197 + Chr3 3034557..3414019 1.10E-43 Link
625 A03 25540561..26105698 + Chr3 19407023..19876059 9.40E-35 Link
626 A03 28296742..28484631 + Chr3 3455355..3770413 6.00E-32 Link
627 A03 14879108..15083500 + Chr3 22795579..23137173 3.60E-23 Link
628 A03 12665668..12997196 + Chr3 19890421..20112944 7.40E-21 Link
634 A03 10054360..10609740 - Chr3 18702074..19467386 0 Link
635 A03 19568987..19840033 - Chr3 2612394..3154644 3.50E-214 Link
636 A03 12402375..12640887 - Chr3 8934472..9271390 9.10E-90 Link
637 A03 18029780..18232010 - Chr3 149999..360889 2.00E-86 Link
638 A03 19129..397703 - Chr3 21911601..22284556 8.70E-82 Link
639 A03 18244696..18314086 - Chr3 1653..101992 2.10E-44 Link
640 A03 10618473..10909167 - Chr3 18362443..18587312 1.10E-49 Link
641 A03 30023598..30299013 - Chr3 4342..239113 1.60E-42 Link
642 A03 1299909..1735627 - Chr3 18861839..19120881 1.50E-26 Link
844 A03 16182678..16957523 + Chr4 5536699..7457714 1.90E-210 Link

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@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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