Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 57 synteny regions on B. rapa A02 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
21 A02 10204616..12417914 + Chr1 26938525..28868225 0 Link
22 A02 12561374..13637523 + Chr1 28965772..29962305 8.30E-228 Link
23 A02 9202862..10224233 + Chr1 26111809..26837308 7.20E-166 Link
24 A02 11629883..12094870 + Chr1 6622094..7092993 1.50E-47 Link
25 A02 14660821..14891564 + Chr1 24398143..24754604 2.80E-36 Link
26 A02 10692333..11169952 + Chr1 5891324..6179289 4.90E-36 Link
32 A02 13644929..14062751 - Chr1 30054884..30409710 4.90E-188 Link
33 A02 18041571..18621082 - Chr1 25621678..26096907 3.40E-169 Link
34 A02 9746036..10658234 - Chr1 7932854..8569996 1.80E-116 Link
35 A02 6273648..6488945 - Chr1 24134085..24395360 1.20E-79 Link
36 A02 13430354..14011085 - Chr1 5290745..5625643 7.10E-73 Link
37 A02 13063854..13331486 - Chr1 5705969..5870840 4.10E-30 Link
596 A02 8243116..9331785 + Chr3 9565627..11468857 1.50E-306 Link
597 A02 2396574..3155486 + Chr3 394070..1108069 9.10E-82 Link
598 A02 19515164..20021609 + Chr3 2062206..2398291 4.10E-28 Link
599 A02 4568768..4802347 + Chr3 16832883..17130210 4.40E-21 Link
600 A02 4154783..4605210 + Chr3 16271652..16703366 1.20E-22 Link
602 A02 22868834..23241357 - Chr3 634653..1075922 2.10E-286 Link
603 A02 20352008..20615018 - Chr3 1761205..2006624 2.20E-139 Link
604 A02 18874932..19587254 - Chr3 1266295..1799870 3.90E-74 Link
605 A02 2077417..2376442 - Chr3 1653..258547 2.80E-52 Link
606 A02 832269..1187752 - Chr3 2821479..3110026 1.80E-47 Link
607 A02 327871..586630 - Chr3 3455355..3890826 2.60E-45 Link
608 A02 3112912..3331285 - Chr3 1813267..1958299 2.70E-26 Link
609 A02 22173104..22323720 - Chr3 18427735..18536970 4.20E-23 Link
610 A02 20831137..20999785 - Chr3 17457795..17752416 8.30E-26 Link
833 A02 5568508..6374357 - Chr4 13177409..13571474 5.40E-82 Link
834 A02 15055407..15437066 - Chr4 6732580..7112480 3.50E-57 Link
835 A02 17352543..18027628 - Chr4 9648527..9867022 5.60E-52 Link
836 A02 15512836..16000250 - Chr4 6245961..6499010 6.80E-43 Link
837 A02 16053754..16747185 - Chr4 10319862..10704816 1.10E-40 Link
838 A02 7850253..8276356 - Chr4 13554604..13709149 3.60E-25 Link
839 A02 16498458..16932540 - Chr4 10157887..10321551 6.90E-21 Link
1043 A02 1281973..4296270 + Chr5 3393569..7697927 0 Link
1044 A02 6549212..8276356 + Chr5 20505180..22298346 0 Link
1045 A02 16053754..18027628 + Chr5 18223453..19347629 4.90E-230 Link
1046 A02 5551257..6247434 + Chr5 22273070..23124513 3.10E-178 Link
1047 A02 18483190..18895743 + Chr5 8428078..9075690 1.20E-77 Link
1048 A02 21499411..21994521 + Chr5 7696135..8423480 9.40E-86 Link
1049 A02 1132830..1367737 + Chr5 5917..352069 4.20E-58 Link
1050 A02 22021979..22386161 + Chr5 26425736..26728666 1.70E-33 Link
1051 A02 20388668..20634884 + Chr5 6129237..6553242 2.50E-26 Link
1052 A02 21220693..21697421 + Chr5 2399504..2758362 2.50E-23 Link
1064 A02 2092..1167732 - Chr5 395634..2943668 0 Link
1065 A02 4904919..5536609 - Chr5 23144980..23823265 0 Link
1066 A02 22255777..22898002 - Chr5 25490073..26369751 9.1e-322 Link
1067 A02 4294945..4953518 - Chr5 23851905..24496351 2.00E-297 Link
1068 A02 19481975..20220582 - Chr5 19366483..20193429 3.10E-249 Link
1069 A02 20770029..21265537 - Chr5 24821258..25273537 4.60E-186 Link
1070 A02 8413788..9184376 - Chr5 15883179..16459237 3.30E-114 Link

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@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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