Syntenic regions between B. rapa Chromosome and A. thaliana Genome
Now, 72 synteny regions on B. rapa A01 compared to A. thalina genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegionStrand Mapped ChromosomeMapped Region E_valueDetail
0 A01 17538582..17949763 + Chr1 17798431..18036510 4.60E-24 Link
7 A01 16647153..17053254 - Chr1 19424944..19807608 1.70E-86 Link
8 A01 20056240..20575095 - Chr1 19821337..20262266 6.30E-66 Link
9 A01 13925558..14336372 - Chr1 18150538..18410022 1.70E-37 Link
10 A01 15971272..16380319 - Chr1 18902930..19175189 3.30E-36 Link
357 A01 2872485..3426099 + Chr2 7435088..8079360 4.00E-89 Link
358 A01 19448023..19725059 + Chr2 19357478..19689173 1.10E-51 Link
359 A01 973242..1486246 + Chr2 10135605..10565198 1.70E-46 Link
360 A01 1500780..1809698 + Chr2 10629737..10931062 1.20E-31 Link
361 A01 2539048..2830646 + Chr2 6986834..7326221 1.30E-27 Link
365 A01 3772196..4327474 - Chr2 9048131..9752863 1.20E-152 Link
366 A01 403375..951849 - Chr2 8090658..8559741 8.10E-82 Link
367 A01 3873..258404 - Chr2 8647813..8880388 1.70E-39 Link
368 A01 3425008..3647685 - Chr2 9874907..10132779 8.90E-31 Link
369 A01 5620615..5898977 - Chr2 14665667..14810164 5.20E-27 Link
561 A01 16289994..17966189 + Chr3 5097153..6242573 3.30E-305 Link
562 A01 21021776..21416902 + Chr3 2411321..3023052 1.20E-179 Link
563 A01 22944269..24260721 + Chr3 17962163..18869384 5.20E-174 Link
564 A01 19838752..20575095 + Chr3 4420173..5122562 4.80E-162 Link
565 A01 20023902..21015313 + Chr3 3475002..4041982 1.20E-156 Link
566 A01 21427125..21899398 + Chr3 3098725..3619567 1.30E-119 Link
567 A01 22484027..22853991 + Chr3 18855161..19192051 6.80E-65 Link
568 A01 24229049..24491336 + Chr3 1917240..2196547 4.50E-58 Link
569 A01 18450614..18549635 + Chr3 2217622..2391650 5.50E-39 Link
570 A01 22215852..22294035 + Chr3 76655..197974 1.40E-27 Link
571 A01 12109026..12721113 + Chr3 8448273..8652605 4.60E-23 Link
576 A01 14448766..15574206 - Chr3 7777818..8450697 3.20E-271 Link
577 A01 15602430..16380319 - Chr3 7166047..7716343 2.10E-203 Link
578 A01 19285259..19656362 - Chr3 512312..851590 5.10E-201 Link
579 A01 13925558..14415096 - Chr3 6251483..6696214 1.30E-174 Link
580 A01 24196723..24470192 - Chr3 1625672..1949789 4.80E-83 Link
581 A01 22313064..22467035 - Chr3 1053366..1362295 4.60E-68 Link
582 A01 19735506..19822481 - Chr3 363881..513027 1.90E-48 Link
583 A01 12257800..12694614 - Chr3 8678738..8970298 3.70E-43 Link
584 A01 12943905..13393828 - Chr3 7963537..8209329 1.80E-39 Link
585 A01 10931780..11274913 - Chr3 17073196..17316566 5.20E-36 Link
586 A01 10561293..11011155 - Chr3 17517355..17832731 2.20E-37 Link
587 A01 3022981..3647685 - Chr3 18814140..19082212 2.80E-29 Link
808 A01 3873..3540603 + Chr4 14052242..17443855 0 Link
809 A01 6850434..8686273 + Chr4 12072857..13247926 0 Link
810 A01 4383599..5830663 + Chr4 9752824..11031572 0 Link
811 A01 5834344..7065447 + Chr4 11126151..12120134 0 Link
812 A01 3507741..3939470 + Chr4 17479173..17874803 9.30E-103 Link
813 A01 8547588..9096423 + Chr4 9395636..9744860 7.50E-83 Link
814 A01 12943905..13491494 + Chr4 8334176..8590345 1.80E-78 Link
815 A01 21789263..22094384 + Chr4 1329952..1610037 4.40E-77 Link
816 A01 13500004..13883670 + Chr4 9206597..9414111 2.40E-75 Link
817 A01 14462247..15671757 + Chr4 8225481..8715339 8.30E-59 Link
820 A01 9109041..10335042 - Chr4 13200593..14044902 0 Link
821 A01 3943856..4376302 - Chr4 18015736..18580717 2.30E-277 Link

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@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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