Synteny regions between A.thalina Chromosome and B.rapa Genome
Now, 164 syntenic regions on A.thaliana Chr1 compared to B.rapa genome are displayed below (Default:50 terms/a page):

#NumChromosomeRegion Mapped ChromosomeMapped RegionStrandE_valueDetail
0 Chr1 17798431..18036510 A01 17538582..17949763 + 4.60E-24 Link
7 Chr1 19424944..19807608 A01 16647153..17053254 - 1.70E-86 Link
8 Chr1 19821337..20262266 A01 20056240..20575095 - 6.30E-66 Link
9 Chr1 18150538..18410022 A01 13925558..14336372 - 1.70E-37 Link
10 Chr1 18902930..19175189 A01 15971272..16380319 - 3.30E-36 Link
21 Chr1 26938525..28868225 A02 10204616..12417914 + 0 Link
22 Chr1 28965772..29962305 A02 12561374..13637523 + 8.30E-228 Link
23 Chr1 26111809..26837308 A02 9202862..10224233 + 7.20E-166 Link
24 Chr1 6622094..7092993 A02 11629883..12094870 + 1.50E-47 Link
25 Chr1 24398143..24754604 A02 14660821..14891564 + 2.80E-36 Link
26 Chr1 5891324..6179289 A02 10692333..11169952 + 4.90E-36 Link
32 Chr1 30054884..30409710 A02 13644929..14062751 - 4.90E-188 Link
33 Chr1 25621678..26096907 A02 18041571..18621082 - 3.40E-169 Link
34 Chr1 7932854..8569996 A02 9746036..10658234 - 1.80E-116 Link
35 Chr1 24134085..24395360 A02 6273648..6488945 - 1.20E-79 Link
36 Chr1 5290745..5625643 A02 13430354..14011085 - 7.10E-73 Link
37 Chr1 5705969..5870840 A02 13063854..13331486 - 4.10E-30 Link
48 Chr1 18176772..18477643 A03 21820187..22121426 + 4.20E-26 Link
49 Chr1 17766874..18042744 A03 21522990..21812240 + 3.80E-31 Link
50 Chr1 12351593..12750383 A03 23583408..23791147 + 4.90E-25 Link
51 Chr1 18542130..18884225 A03 22150620..22378488 + 5.70E-22 Link
57 Chr1 19570058..20031566 A03 20909379..21282767 - 3.30E-69 Link
58 Chr1 504673..924726 A03 17207851..17740784 - 2.00E-61 Link
59 Chr1 1697583..1904873 A03 24484529..24681594 - 1.00E-46 Link
60 Chr1 2037311..2212546 A03 24035483..24438746 - 1.20E-38 Link
78 Chr1 12066595..12745648 A04 16264351..17275524 + 7.40E-91 Link
79 Chr1 18416480..18758433 A04 12799571..13225024 + 4.50E-35 Link
89 Chr1 22139184..22832962 A04 8285548..9517189 - 1.40E-277 Link
90 Chr1 1775643..2202774 A04 10578807..11461639 - 6.60E-99 Link
91 Chr1 3524018..3882819 A04 8340791..9202853 - 1.60E-72 Link
92 Chr1 1167457..1355442 A04 11892295..12311184 - 1.80E-24 Link
93 Chr1 1469610..1724734 A04 11403911..11773815 - 9.50E-23 Link
97 Chr1 19407364..20262266 A05 2995600..4120043 + 8.90E-150 Link
98 Chr1 1762734..2290977 A05 14343505..15651757 + 1.80E-66 Link
99 Chr1 7704255..7927278 A05 8052460..8313605 + 8.90E-59 Link
100 Chr1 19751372..20106015 A05 13159467..13768645 + 2.20E-52 Link
101 Chr1 17798431..18042744 A05 4830291..5381508 + 2.20E-40 Link
102 Chr1 18198227..18477643 A05 5647177..6159797 + 1.00E-35 Link
103 Chr1 17970678..18322284 A05 12787151..13087326 + 6.70E-31 Link
104 Chr1 29220538..29452417 A05 8052460..8276619 + 4.30E-28 Link
105 Chr1 20560284..20753079 A05 4153973..4547540 + 8.10E-32 Link
106 Chr1 11396402..11821710 A05 21687627..21953076 + 5.80E-31 Link
107 Chr1 18977284..19299118 A05 7077481..7595310 + 6.40E-22 Link
108 Chr1 1114405..1333567 A05 22464144..22934498 + 6.60E-23 Link
114 Chr1 18681932..19702916 A05 8327537..9583784 - 0 Link
115 Chr1 3252240..3680924 A05 15744098..15991449 - 4.20E-165 Link
116 Chr1 11372425..11630626 A05 10921216..11360682 - 4.90E-74 Link
117 Chr1 18607047..19050162 A05 6282667..7090449 - 2.30E-64 Link
118 Chr1 20729182..20966341 A05 14011890..14149036 - 1.00E-38 Link
119 Chr1 613216..864125 A05 16526313..16893336 - 1.90E-36 Link

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@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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