|Manual for Sinbase|
|# Main page|
Home: quick navigation; management;
search Sinbase; instruction for S. indicum
genome sequencing project; news in Sinbase; how to cite; hot link and
Browse: phenotypes; genome composition (including: putative gene sets, repeat elements, non-coding RNA); genetic
linkage map; comparative genomics (including: synteny regions among
A. thaliana, G. max, S.lycopersicum,
S. indicum; genome browser by scaffolds and pseudomolecular chromosomes.
Search: general search (query: gene ID,
repeat element ID, non-coding RNA ID); orthologous genes;
colinear regions among species; advanced (local BLAST)
Document: data statistics (data statistics of
Sinbase collected); references (references about S. indicum genome.); resources links (useful links).
Help: manual (manual of using
Sinbase); feedback (send your suggestions or advices to
Download: download (data files of
|# Genome component page|
browse genome components of S. indicum, including putative genes,
repeat elements and non-coding RNA by popup manu and also can click
cartoon picture of pseudochromosome to get information of
corresponding pseudochromosome. For putative gene, there are
3 parts in this section, gene basic information, putative function
|# Linkage page|
☺User can browse the
genetics linkage group of S. indicum by clicking the tab. From each
cartoon picture of genetics linkage group, users can get information of
genetics linkage group and corresponding markers which can be used to anchor
scaffolds from S. indicum genome.
|# colinear regions page|
is an colinear regions example between S. indicum and A. thaliana genome.
In this page, colinear regions with different length were distinguished by
different colors. Through clicking pseudomolecular
chormosome ID, user can browse colinear regions between target
chromosome and corresponding species.
is an colinear regions example between A. thaliana Chr01 chromosome and
S. indicum genome. Users can retain that there are 97 colinear regions
between A.thaliana Chr01 chromosome and S. indicum genome.
☺Picking up a region of
A. thaliana Chr1 chromosome as an example,
users can browse details of target regions compared to S. indicum genome.
Further, users can get gene pairs between the two regions.