Version 1.0

New in PlantRGDB

2011/07/03 R genes of B.oleracea were added in PlantRGDB.

2011/06/18 R genes of Glycine max were added in PlantRGDB.

2011/05/30 R genes of P.trichocarpa were added in PlantRGDB.

2011/05/20 R genes of R.communis were added in PlantRGDB.

2011/05/30 R genes of Medicago truncatula were added in PlantRGDB.

2011/05/30 R genes of Populus trichocarpa were added in PlantRGDB.

2011/05/30 R genes of Arabidopsis thalina were added in PlantRGDB.

 

Welcome to Visit PlantRGDB

Hot Links

PRGdb

NIBLRRS

PlantGDB

JGI

Phytozome

HMMER

TMHMM Server v.2.0

Marcoil

Paircoil2

COILS

......

         The PlantRGDB is the first plant disease resistance genes data resource that combines information on genomics, transcriptome and comparative genomics. In this database, extensive annotations including gene detail, protein functional domains, GO assignment, phylogenetic and evolutionary analysis of sequences for all R genes are provided in detail, and also offered R genes distribution on pseudochromosome for genome completed species. Particularly, the PlantRGDB supply genome-scale comparative studies of R genes in sequencing species and cross-link between these making it a unique and comprehensive resource. This rich information of R genes that we collected will provide an unprecedented opportunity for plant molecular biologists in this field.

 

Pictures in this Site

Important Plant Species with Whole Genome Sequencing

SPECIESDATE of Published Online JOURNALPubMed
Arabidopsis (Arabidopsis thaliana)* 14 December 2000NaturePubMed
Rice (Oryza sativa L. ssp. japonica)* 5 April 2002SciencePubMed
Rice (Oryza sativa  L. ssp. indica) 5 April 2002SciencePubMed
Poplar (Populus trichocarpa)* 15 September 2006SciencePubMed
Grape (Vitis vinifera)* 27 September 2007NaturePubMed
Moss (Physcomitrella pattens) 13 December 2007SciencePubMed
Papaya (Carica papaya)* 24 April 2008NaturePubMed
Lotus (Lotus japnicus)* 28 May 2008DNA ResearchPubMed
Sorghum (Sorghum bicolor)* 29 January 2009NaturePubMed
Maize (Zea mays)* 20 November 2009SciencePubMed
Cucumber (Cucumis sativus)* 1 November 2009Nature GeneticsPubMed
Soybean (Glycine max)* 14 January 2010NaturePubMed
Brachypodium (Brachypodium distachyon)* 11 February 2010NaturePubMed
Apple (Malus x domestica)* 29 August 2010Nature GeneticsPubMed
Castor Bean (Ricinus communis)* 22 August 2010Nature BiotechnologyPubMed
Strawberry (Fragaria vesca)*26 December 2010Nature GeneticsPubMed
Cocoa (Theobroma cacao)*26 December 2010Nature GeneticsPubMed
Arabidopsis (Arabidopsis lyrata)18 March 2011Nature GeneticsPubMed
Selaginella (Selaginella moellendorffii)20 May 2011SciencePubMed
Palm (Phoenix dactylifera)29 May 2011Nature BiotechnologyPubMed
Potato (Solanum tuberosum)10 July 2011NaturePubMed
Chinese cabbage (Brassica rapa)*28 August 2011Nature GeneticsLink

*R genes sequences of plant species was included.


@2010 Department of Genomics and Molecular Biology, Oilcrops Research Institute.


logo